STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCNT1Cyclin-T1; Belongs to the cyclin family. (722 aa)    
Predicted Functional Partners:
CDK9
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
   
 0.997
AFF4
AF4/FMR2 family member 4.
   
 0.990
AFF1
AF4/FMR2 family member 1.
   
 0.931
LOC110471003
Cyclin-dependent kinase 7.
   
 
 0.886
ELL
RNA polymerase II elongation factor ELL.
    
 0.880
LARP7
La-related protein 7.
   
 0.875
CCNH
Cyclin-H; Belongs to the cyclin family.
     
 0.861
CDK13
Cyclin-dependent kinase 13.
   
 0.843
CDK12
Cyclin-dependent kinase 12.
   
 0.843
HEXIM1
Protein HEXIM1.
    
 
 0.828
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.