STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCNT1Cyclin-T1; Belongs to the cyclin family. (722 aa)    
Predicted Functional Partners:
CDK9
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
   
 0.999
AFF4
AF4/FMR2 family member 4.
   
 0.999
CCNT2
Cyclin-T2; Belongs to the cyclin family.
    
0.992
LARP7
La-related protein 7.
   
 0.980
AFF1
AF4/FMR2 family member 1.
   
 0.966
SUPT5H
Transcription elongation factor SPT5.
   
 0.958
HEXIM1
Protein HEXIM1.
    
 
 0.947
ELL
RNA polymerase II elongation factor ELL.
   
 0.927
POLR2A
DNA-directed RNA polymerase II subunit RPB1.
    
 0.893
MYC
Myc proto-oncogene protein.
    
 
 0.881
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.