STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL4A6Collagen alpha-6(IV) chain. (233 aa)    
Predicted Functional Partners:
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.915
CD44
CD44 antigen.
    
 0.901
COL13A1
Collagen alpha-1(XIII) chain.
 
      0.864
COL10A1
Collagen alpha-1(X) chain.
 
      0.835
ITGA1
Integrin alpha-1; Belongs to the integrin alpha chain family.
    
 0.745
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.738
ITGA2
Integrin alpha-2; Belongs to the integrin alpha chain family.
    
 0.735
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.730
ITGAV
Integrin alpha-V; Belongs to the integrin alpha chain family.
    
 0.708
ITGA7
Integrin alpha-7.
     
 0.706
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.