Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRKD3Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. (890 aa)    
Predicted Functional Partners:
PKD1
Polycystin 1.
    
 
 0.803
CD40LG
CD40 ligand; Belongs to the tumor necrosis factor family.
      
 0.572
PKDREJ
Polycystic kidney disease and receptor for egg jelly-related protein.
    
 
 0.570
NFKBIA
NF-kappa-B inhibitor alpha.
    
 
 0.569
CERT1
Collagen type IV alpha-3-binding protein.
    
 0.538
TMED3
Transmembrane emp24 domain-containing protein 3.
      
 0.518
TMED7
Transmembrane emp24 domain-containing protein 7.
      
 0.518
TRAF3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
      
 0.516
TRAF5
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
      
 0.516
RAP1B
Ras-related protein Rap-1b.
      
 0.465
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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