ENSLSDP00000001381 protein (Lonchura striata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSLSDP00000001381

annotation not available (162 aa)

Predicted Functional Partners:

ENSLSDP00000011214

0.578

ENSLSDP00000015473

0.539

ENSLSDP00000022436

0.534

OTOL1

0.525

C1QTNF2

0.524

C1QTNF7

0.523

C1QTNF9

0.520

COLEC10

0.518

ENSLSDP00000002133

0.513

ENSLSDP00000002137

0.513

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1QTNF2	ENSLSDP00000001381	ENSLSDP00000005569	ENSLSDP00000001381	Complement C1q tumor necrosis factor-related protein 2.	annotation not available	0.524
C1QTNF2	ENSLSDP00000002133	ENSLSDP00000005569	ENSLSDP00000002133	Complement C1q tumor necrosis factor-related protein 2.	annotation not available	0.487
C1QTNF2	ENSLSDP00000002137	ENSLSDP00000005569	ENSLSDP00000002137	Complement C1q tumor necrosis factor-related protein 2.	annotation not available	0.487
C1QTNF2	ENSLSDP00000011214	ENSLSDP00000005569	ENSLSDP00000011214	Complement C1q tumor necrosis factor-related protein 2.	annotation not available	0.576
C1QTNF2	ENSLSDP00000015473	ENSLSDP00000005569	ENSLSDP00000015473	Complement C1q tumor necrosis factor-related protein 2.	annotation not available	0.536
C1QTNF7	ENSLSDP00000001381	ENSLSDP00000009629	ENSLSDP00000001381	Complement C1q tumor necrosis factor-related protein 7.	annotation not available	0.523
C1QTNF7	ENSLSDP00000002133	ENSLSDP00000009629	ENSLSDP00000002133	Complement C1q tumor necrosis factor-related protein 7.	annotation not available	0.487
C1QTNF7	ENSLSDP00000002137	ENSLSDP00000009629	ENSLSDP00000002137	Complement C1q tumor necrosis factor-related protein 7.	annotation not available	0.487
C1QTNF7	ENSLSDP00000011214	ENSLSDP00000009629	ENSLSDP00000011214	Complement C1q tumor necrosis factor-related protein 7.	annotation not available	0.579
C1QTNF7	ENSLSDP00000015473	ENSLSDP00000009629	ENSLSDP00000015473	Complement C1q tumor necrosis factor-related protein 7.	annotation not available	0.538
C1QTNF9	ENSLSDP00000001381	ENSLSDP00000019206	ENSLSDP00000001381	Complement C1q and tumor necrosis factor-related protein 9A.	annotation not available	0.520
C1QTNF9	ENSLSDP00000002133	ENSLSDP00000019206	ENSLSDP00000002133	Complement C1q and tumor necrosis factor-related protein 9A.	annotation not available	0.462
C1QTNF9	ENSLSDP00000002137	ENSLSDP00000019206	ENSLSDP00000002137	Complement C1q and tumor necrosis factor-related protein 9A.	annotation not available	0.462
C1QTNF9	ENSLSDP00000011214	ENSLSDP00000019206	ENSLSDP00000011214	Complement C1q and tumor necrosis factor-related protein 9A.	annotation not available	0.522
C1QTNF9	ENSLSDP00000015473	ENSLSDP00000019206	ENSLSDP00000015473	Complement C1q and tumor necrosis factor-related protein 9A.	annotation not available	0.526
C1QTNF9	ENSLSDP00000022436	ENSLSDP00000019206	ENSLSDP00000022436	Complement C1q and tumor necrosis factor-related protein 9A.	annotation not available	0.525
COLEC10	ENSLSDP00000001381	ENSLSDP00000004908	ENSLSDP00000001381	Collectin-10.	annotation not available	0.518
COLEC10	ENSLSDP00000002133	ENSLSDP00000004908	ENSLSDP00000002133	Collectin-10.	annotation not available	0.475
COLEC10	ENSLSDP00000002137	ENSLSDP00000004908	ENSLSDP00000002137	Collectin-10.	annotation not available	0.475
COLEC10	ENSLSDP00000011214	ENSLSDP00000004908	ENSLSDP00000011214	Collectin-10.	annotation not available	0.532