Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SLC38A8Putative sodium-coupled neutral amino acid transporter 8. (411 aa)    
Predicted Functional Partners:
GAN
Kelch-like protein 16 (gigaxonin).
      
 0.669
ZBTB43
Zinc finger and BTB domain-containing protein 43.
     
 0.594
SLC25A34
Solute carrier family 25 member 34; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.569
SLC25A13
Calcium-binding mitochondrial carrier protein Aralar2; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.569
PDE7B
Phosphodiesterase.
      
 0.568
SLC25A12
Calcium-binding mitochondrial carrier protein Aralar1; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.567
BLOC1S3
Biogenesis of lysosome-related organelles complex 1 subunit 3.
      
 0.564
SLC43A3
Solute carrier family 43 member 3.
      
 0.555
SLC43A2
Large neutral amino acids transporter small subunit 4.
      
 0.555
ASCC3
Activating signal cointegrator 1 complex subunit 3.
      
 0.494
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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