Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001386annotation not available (327 aa)    
Predicted Functional Partners:
ENSLSDP00000003776
annotation not available
   
  
 0.701
ELOF1
Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.
    
 
 0.635
GPATCH11
G patch domain-containing protein 11.
      
 0.596
UVSSA
UV-stimulated scaffold protein A.
    
 
 0.585
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
    
   0.579
DDB1
DNA damage-binding protein 1.
    
   0.579
POLR2G
DNA-directed RNA polymerase II subunit RPB7.
    
   0.579
ENSLSDP00000015676
annotation not available
    
   0.579
POLR2L
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
   0.579
ERCC6
DNA excision repair protein ERCC-6.
    
   0.579
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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