HCRTR2-2 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCRTR2-2

Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family. (457 aa)

Predicted Functional Partners:

QRFP

0.553

LOC110481425

0.516

GNG11

0.483

SAG

0.456

ARRB1

0.456

ARR3

0.456

GNB1

0.442

GNB4

0.442

GNB3

0.442

GNB5

0.442

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARR3	GNG11	ENSLSDP00000020819	ENSLSDP00000012217	Arrestin-C.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.516
ARR3	HCRTR2-2	ENSLSDP00000020819	ENSLSDP00000001395	Arrestin-C.	Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family.	0.456
ARR3	LOC110481425	ENSLSDP00000020819	ENSLSDP00000016410	Arrestin-C.	Visinin.	0.428
ARRB1	GNG11	ENSLSDP00000020553	ENSLSDP00000012217	Beta-arrestin-1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.516
ARRB1	HCRTR2-2	ENSLSDP00000020553	ENSLSDP00000001395	Beta-arrestin-1.	Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family.	0.456
ARRB1	LOC110481425	ENSLSDP00000020553	ENSLSDP00000016410	Beta-arrestin-1.	Visinin.	0.428
GNB1	GNB5	ENSLSDP00000007676	ENSLSDP00000022861	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein subunit beta-5.	0.400
GNB1	GNG11	ENSLSDP00000007676	ENSLSDP00000012217	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.954
GNB1	HCRTR2-2	ENSLSDP00000007676	ENSLSDP00000001395	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family.	0.442
GNB3	GNB5	ENSLSDP00000016932	ENSLSDP00000022861	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Guanine nucleotide-binding protein subunit beta-5.	0.403
GNB3	GNG11	ENSLSDP00000016932	ENSLSDP00000012217	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.895
GNB3	HCRTR2-2	ENSLSDP00000016932	ENSLSDP00000001395	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family.	0.442
GNB4	GNB5	ENSLSDP00000007849	ENSLSDP00000022861	G protein subunit beta 4.	Guanine nucleotide-binding protein subunit beta-5.	0.402
GNB4	GNG11	ENSLSDP00000007849	ENSLSDP00000012217	G protein subunit beta 4.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.931
GNB4	HCRTR2-2	ENSLSDP00000007849	ENSLSDP00000001395	G protein subunit beta 4.	Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family.	0.442
GNB5	GNB1	ENSLSDP00000022861	ENSLSDP00000007676	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.400
GNB5	GNB3	ENSLSDP00000022861	ENSLSDP00000016932	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	0.403
GNB5	GNB4	ENSLSDP00000022861	ENSLSDP00000007849	Guanine nucleotide-binding protein subunit beta-5.	G protein subunit beta 4.	0.402
GNB5	GNG11	ENSLSDP00000022861	ENSLSDP00000012217	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.864
GNB5	HCRTR2-2	ENSLSDP00000022861	ENSLSDP00000001395	Guanine nucleotide-binding protein subunit beta-5.	Orexin receptor type 2; Belongs to the G-protein coupled receptor 1 family.	0.442