STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001401annotation not available (138 aa)    
Predicted Functional Partners:
COL4A2
Collagen alpha-2(IV) chain.
 
    
0.753
COL4A4
Collagen alpha-4(IV) chain.
 
     0.595
COL4A1_0
Collagen alpha-1(IV) chain.
 
     0.548
COL9A1
Collagen alpha-1(IX) chain.
  
     0.536
ENSLSDP00000015473
annotation not available
  
     0.535
ENSLSDP00000011214
annotation not available
  
     0.530
C1QTNF7
Complement C1q tumor necrosis factor-related protein 7.
  
     0.526
C1QTNF2
Complement C1q tumor necrosis factor-related protein 2.
  
     0.524
C1QTNF9
Complement C1q and tumor necrosis factor-related protein 9A.
  
 
   0.523
COLEC10
Collectin-10.
  
 
  0.522
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.