STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001413SURP and G-patch domain-containing protein 1-like isoform X1. (112 aa)    
Predicted Functional Partners:
U2AF2
Splicing factor U2AF subunit.
    
 0.945
RBM17
Splicing factor 45.
   
 
 0.924
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 0.894
RBM5
RNA-binding protein 5.
   
 0.836
RBM6
RNA-binding protein 6.
   
 0.836
SF1
Splicing factor 1.
   
 0.802
HTATSF1
HIV Tat-specific factor 1.
     
 0.746
CDC40
Pre-mRNA-processing factor 17.
     
  0.724
DNAJC8
DnaJ subfamily C member 8.
     
  0.724
TCERG1
Transcription elongation regulator 1.
   
 
  0.722
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.