Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNNStannin. (87 aa)    
Predicted Functional Partners:
GATAD2B
Transcriptional repressor p66-beta.
      
 0.814
HDGFL3
Hepatoma-derived growth factor-related protein 3.
      
 0.593
GPR22
Putative G-protein coupled receptor 22.
      
 0.576
SRRD
SRR1-like protein.
      
 0.570
TXNDC11
Thioredoxin domain-containing protein 11.
      
 0.568
SUCO
SUN domain-containing ossification factor.
      
 0.567
GATAD2A
Transcriptional repressor p66-alpha.
      
 0.540
ENSLSDP00000011424
annotation not available
      
 0.540
ARMC10
Armadillo repeat-containing protein 10.
      
 0.484
PPP3CB
Serine/threonine-protein phosphatase.
      
 0.452
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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