STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF20L1PHD finger protein 20-like protein 1. (1042 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.773
LOC110477051
Fanconi anemia group M protein.
    
 0.773
ZNF280D
Zinc finger protein 280D.
   
 0.608
GATAD2B
Transcriptional repressor p66-beta.
    
 
 0.585
HMG20A
High mobility group protein 20A.
    
 
 0.563
BCL11A
B-cell lymphoma/leukemia 11A.
    
  0.524
KANSL1
KAT8 regulatory NSL complex subunit 1.
   
   0.514
ANKMY2
Ankyrin repeat and MYND domain-containing protein 2.
    
 
 0.493
TSPAN13
Tetraspanin-13; Belongs to the tetraspanin (TM4SF) family.
     
 0.477
LIN54
Protein lin-54.
   
 0.471
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.