close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LITAFLipopolysaccharide-induced tumor necrosis factor-alpha factor. (147 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.773
LOC110477051
Fanconi anemia group M protein.
    
 0.773
MYO10
Unconventional myosin-X; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.672
GALNT2
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.672
CRY2
Cryptochrome-2.
      
 0.672
SH3TC2
SH3 domain and tetratricopeptide repeat-containing protein 2.
   
  
 0.662
COL4A1
Collagen alpha-1(IV) chain.
    
 0.655
IL6
Interleukin-6.
   
 
 0.649
RLOC_00015173
Interleukin; Belongs to the IL-15/IL-21 family.
      
 0.621
IL1B
Interleukin-1; Belongs to the IL-1 family.
      
 0.615
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.