STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUNH9orf16UPF0184 protein C9orf16. (93 aa)    
Predicted Functional Partners:
ATP6V1D
V-type proton ATPase subunit D.
    
   0.922
KRT20
Keratin, type I cytoskeletal 12; Belongs to the intermediate filament family.
    
   0.659
CEP290
Centrosomal protein.
    
   0.627
LRRC73
Leucine-rich repeat-containing protein 73.
      
 0.569
CNST
Consortin.
    
   0.568
ANKRD13D
Ankyrin repeat domain-containing protein 13D.
      
 0.551
TEPSIN
AP-4 complex accessory subunit tepsin.
      
 0.551
POLR3H
DNA-directed RNA polymerase III subunit RPC8.
      
 0.460
MTRES1
Uncharacterized protein C6orf203.
      
 0.456
SURF6
Surfeit locus protein 6.
      
 0.443
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.