Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX8Sorting nexin-8. (445 aa)    
Predicted Functional Partners:
MSH3
DNA mismatch repair protein Msh3.
    
   0.922
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.887
SNX1
Sorting nexin-1.
    
 
 0.781
IGF2R
Cation-independent mannose-6-phosphate receptor.
    
 0.760
SNX9
Sorting nexin.
   
 0.685
TMEM203
Transmembrane protein 203.
      
 0.678
SNX6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.665
SNX5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.665
ARL1
ADP-ribosylation factor-like protein 1; Belongs to the small GTPase superfamily. Arf family.
    
  0.650
HEATR1
HEAT repeat-containing protein 1.
    
   0.628
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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