ENSLSDP00000001468 protein (Lonchura striata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSLSDP00000001468

Cell division cycle protein 37. (295 aa)

Predicted Functional Partners:

HSP90B1

0.751

LOC110476439

0.746

LOC110481174

0.746

ENSLSDP00000014316

0.746

HSP90AB1

0.746

PINK1

0.721

CDK9

0.697

CHUK

0.689

STK11

0.688

IKBKB

0.685

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK9	ENSLSDP00000001468	ENSLSDP00000000990	ENSLSDP00000001468	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Cell division cycle protein 37.	0.697
CDK9	ENSLSDP00000014316	ENSLSDP00000000990	ENSLSDP00000014316	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	annotation not available	0.561
CDK9	HSP90AB1	ENSLSDP00000000990	ENSLSDP00000014319	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Heat shock cognate protein HSP 90-beta.	0.561
CDK9	LOC110476439	ENSLSDP00000000990	ENSLSDP00000006785	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Heat shock protein HSP 90-alpha.	0.561
CDK9	LOC110481174	ENSLSDP00000000990	ENSLSDP00000012351	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Heat shock protein HSP 90-alpha.	0.561
CDK9	PINK1	ENSLSDP00000000990	ENSLSDP00000021256	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.408
CHUK	ENSLSDP00000001468	ENSLSDP00000015600	ENSLSDP00000001468	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Cell division cycle protein 37.	0.689
CHUK	ENSLSDP00000014316	ENSLSDP00000015600	ENSLSDP00000014316	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	annotation not available	0.582
CHUK	HSP90AB1	ENSLSDP00000015600	ENSLSDP00000014319	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Heat shock cognate protein HSP 90-beta.	0.582
CHUK	IKBKB	ENSLSDP00000015600	ENSLSDP00000009480	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.999
CHUK	LOC110476439	ENSLSDP00000015600	ENSLSDP00000006785	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Heat shock protein HSP 90-alpha.	0.582
CHUK	LOC110481174	ENSLSDP00000015600	ENSLSDP00000012351	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	Heat shock protein HSP 90-alpha.	0.582
ENSLSDP00000001468	CDK9	ENSLSDP00000001468	ENSLSDP00000000990	Cell division cycle protein 37.	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	0.697
ENSLSDP00000001468	CHUK	ENSLSDP00000001468	ENSLSDP00000015600	Cell division cycle protein 37.	Inhibitor of nuclear factor kappa-B kinase subunit alpha.	0.689
ENSLSDP00000001468	ENSLSDP00000014316	ENSLSDP00000001468	ENSLSDP00000014316	Cell division cycle protein 37.	annotation not available	0.746
ENSLSDP00000001468	HSP90AB1	ENSLSDP00000001468	ENSLSDP00000014319	Cell division cycle protein 37.	Heat shock cognate protein HSP 90-beta.	0.746
ENSLSDP00000001468	HSP90B1	ENSLSDP00000001468	ENSLSDP00000020848	Cell division cycle protein 37.	Endoplasmin.	0.751
ENSLSDP00000001468	IKBKB	ENSLSDP00000001468	ENSLSDP00000009480	Cell division cycle protein 37.	Inhibitor of nuclear factor kappa-B kinase subunit beta.	0.685
ENSLSDP00000001468	LOC110476439	ENSLSDP00000001468	ENSLSDP00000006785	Cell division cycle protein 37.	Heat shock protein HSP 90-alpha.	0.746
ENSLSDP00000001468	LOC110481174	ENSLSDP00000001468	ENSLSDP00000012351	Cell division cycle protein 37.	Heat shock protein HSP 90-alpha.	0.746