SLC7A6OS protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC7A6OS

Putative RNA polymerase II nuclear localization protein SLC7A6OS. (320 aa)

Predicted Functional Partners:

POLR2C

0.851

POLR2E

0.824

POLR2B

0.794

ENSLSDP00000015676

0.742

POLR2D

0.740

POLR2J

0.730

POLR2L

0.683

POLR1C

0.668

POLR2G

0.641

GPN1

0.596

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLSDP00000015676	POLR1C	ENSLSDP00000015676	ENSLSDP00000005911	annotation not available	DNA-directed RNA polymerases I and III subunit RPAC1.	0.872
ENSLSDP00000015676	POLR2B	ENSLSDP00000015676	ENSLSDP00000009506	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
ENSLSDP00000015676	POLR2C	ENSLSDP00000015676	ENSLSDP00000022415	annotation not available	DNA-directed RNA polymerase II subunit RPB3.	0.998
ENSLSDP00000015676	POLR2D	ENSLSDP00000015676	ENSLSDP00000001933	annotation not available	DNA-directed RNA polymerase II subunit RPB4.	0.998
ENSLSDP00000015676	POLR2E	ENSLSDP00000015676	ENSLSDP00000020942	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.998
ENSLSDP00000015676	POLR2G	ENSLSDP00000015676	ENSLSDP00000009908	annotation not available	DNA-directed RNA polymerase II subunit RPB7.	0.998
ENSLSDP00000015676	POLR2J	ENSLSDP00000015676	ENSLSDP00000016434	annotation not available	DNA-directed RNA polymerase II subunit RPB11-a.	0.999
ENSLSDP00000015676	POLR2L	ENSLSDP00000015676	ENSLSDP00000022046	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.998
ENSLSDP00000015676	SLC7A6OS	ENSLSDP00000015676	ENSLSDP00000001485	annotation not available	Putative RNA polymerase II nuclear localization protein SLC7A6OS.	0.742
GPN1	POLR1C	ENSLSDP00000015756	ENSLSDP00000005911	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.767
GPN1	POLR2B	ENSLSDP00000015756	ENSLSDP00000009506	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.939
GPN1	POLR2C	ENSLSDP00000015756	ENSLSDP00000022415	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerase II subunit RPB3.	0.906
GPN1	POLR2D	ENSLSDP00000015756	ENSLSDP00000001933	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerase II subunit RPB4.	0.419
GPN1	POLR2E	ENSLSDP00000015756	ENSLSDP00000020942	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.822
GPN1	POLR2G	ENSLSDP00000015756	ENSLSDP00000009908	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerase II subunit RPB7.	0.819
GPN1	POLR2J	ENSLSDP00000015756	ENSLSDP00000016434	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	DNA-directed RNA polymerase II subunit RPB11-a.	0.763
GPN1	SLC7A6OS	ENSLSDP00000015756	ENSLSDP00000001485	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	Putative RNA polymerase II nuclear localization protein SLC7A6OS.	0.596
POLR1C	ENSLSDP00000015676	ENSLSDP00000005911	ENSLSDP00000015676	DNA-directed RNA polymerases I and III subunit RPAC1.	annotation not available	0.872
POLR1C	GPN1	ENSLSDP00000005911	ENSLSDP00000015756	DNA-directed RNA polymerases I and III subunit RPAC1.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.767
POLR1C	POLR2B	ENSLSDP00000005911	ENSLSDP00000009506	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.961