STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPASTSpastin; Belongs to the AAA ATPase family. (612 aa)    
Predicted Functional Partners:
IST1
IST1.
    
 0.903
C8H1orf112
Uncharacterized protein C1orf112.
   
 0.800
UBXN7
UBX domain-containing protein 7.
   
 0.713
CHMP1B
Charged multivesicular body protein 1b.
    
 
 0.697
WDR90
WD repeat-containing protein 90.
    
 0.663
REEP1
Receptor expression-enhancing protein.
   
  
 0.661
NME8
Thioredoxin domain-containing protein 3; Belongs to the NDK family.
   
 0.644
CHMP6
Charged multivesicular body protein 6.
    
 0.626
WRN
Werner syndrome ATP-dependent helicase.
   
 0.622
CHMP2A
Charged multivesicular body protein 2a.
    
 0.609
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.