Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPF2Ribosome production factor 2. (306 aa)    
Predicted Functional Partners:
NIP7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.995
EBNA1BP2
Putative rRNA-processing protein EBP2.
   
 
 0.994
NIFK
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
 
 0.993
BRIX1
Ribosome biogenesis protein BRX1.
   
 
 0.993
GNL3
Guanine nucleotide-binding protein-like 3.
   
 
 0.993
RSL24D1
Putative ribosome biogenesis protein RLP24.
   
 
 0.993
MRTO4
MRNA turnover protein 4 homolog.
   
 
 0.993
PUM3
Pumilio domain-containing protein KIAA0020.
   
 
 0.992
RSL1D1
Ribosomal L1 domain-containing protein 1.
   
 
 0.991
GNL2
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 
 0.991
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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