ENSLSDP00000001538 protein (Lonchura striata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLSDP00000001538

Leukotriene B4 receptor 1-like. (341 aa)

Predicted Functional Partners:

GNA11

0.547

LOC110470681

0.547

LTA4H

0.516

RARRES2

0.479

PLCB2

0.475

PLCB4

0.475

PLCB1

0.475

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLSDP00000001538	GNA11	ENSLSDP00000001538	ENSLSDP00000013250	Leukotriene B4 receptor 1-like.	Guanine nucleotide-binding protein subunit alpha-11.	0.547
ENSLSDP00000001538	LOC110470681	ENSLSDP00000001538	ENSLSDP00000017833	Leukotriene B4 receptor 1-like.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.547
ENSLSDP00000001538	LTA4H	ENSLSDP00000001538	ENSLSDP00000023553	Leukotriene B4 receptor 1-like.	Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.	0.516
ENSLSDP00000001538	PLCB1	ENSLSDP00000001538	ENSLSDP00000019942	Leukotriene B4 receptor 1-like.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.475
ENSLSDP00000001538	PLCB2	ENSLSDP00000001538	ENSLSDP00000006077	Leukotriene B4 receptor 1-like.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.475
ENSLSDP00000001538	PLCB4	ENSLSDP00000001538	ENSLSDP00000019874	Leukotriene B4 receptor 1-like.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.475
ENSLSDP00000001538	RARRES2	ENSLSDP00000001538	ENSLSDP00000018131	Leukotriene B4 receptor 1-like.	Retinoic acid receptor responder protein 2.	0.479
GNA11	ENSLSDP00000001538	ENSLSDP00000013250	ENSLSDP00000001538	Guanine nucleotide-binding protein subunit alpha-11.	Leukotriene B4 receptor 1-like.	0.547
GNA11	LOC110470681	ENSLSDP00000013250	ENSLSDP00000017833	Guanine nucleotide-binding protein subunit alpha-11.	Guanine nucleotide-binding protein G(Q) subunit alpha.	0.900
GNA11	PLCB1	ENSLSDP00000013250	ENSLSDP00000019942	Guanine nucleotide-binding protein subunit alpha-11.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.965
GNA11	PLCB2	ENSLSDP00000013250	ENSLSDP00000006077	Guanine nucleotide-binding protein subunit alpha-11.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.965
GNA11	PLCB4	ENSLSDP00000013250	ENSLSDP00000019874	Guanine nucleotide-binding protein subunit alpha-11.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.970
LOC110470681	ENSLSDP00000001538	ENSLSDP00000017833	ENSLSDP00000001538	Guanine nucleotide-binding protein G(Q) subunit alpha.	Leukotriene B4 receptor 1-like.	0.547
LOC110470681	GNA11	ENSLSDP00000017833	ENSLSDP00000013250	Guanine nucleotide-binding protein G(Q) subunit alpha.	Guanine nucleotide-binding protein subunit alpha-11.	0.900
LOC110470681	PLCB1	ENSLSDP00000017833	ENSLSDP00000019942	Guanine nucleotide-binding protein G(Q) subunit alpha.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.965
LOC110470681	PLCB2	ENSLSDP00000017833	ENSLSDP00000006077	Guanine nucleotide-binding protein G(Q) subunit alpha.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.965
LOC110470681	PLCB4	ENSLSDP00000017833	ENSLSDP00000019874	Guanine nucleotide-binding protein G(Q) subunit alpha.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.970
LTA4H	ENSLSDP00000001538	ENSLSDP00000023553	ENSLSDP00000001538	Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.	Leukotriene B4 receptor 1-like.	0.516
PLCB1	ENSLSDP00000001538	ENSLSDP00000019942	ENSLSDP00000001538	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Leukotriene B4 receptor 1-like.	0.475
PLCB1	GNA11	ENSLSDP00000019942	ENSLSDP00000013250	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Guanine nucleotide-binding protein subunit alpha-11.	0.965