Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MEMO1Protein MEMO1. (297 aa)    
Predicted Functional Partners:
RPL32
Large subunit ribosomal protein L32e.
 
      0.886
UBE3D
E3 ubiquitin-protein ligase E3D.
    
   0.836
BPNT1
3'(2'),5'-bisphosphate nucleotidase 1.
  
   0.650
DIAPH2
Protein diaphanous 2.
     
 0.600
DIAPH3
Protein diaphanous 3.
     
 0.600
HMBOX1
Homeobox-containing protein 1.
    
   0.586
ZNRF1
E3 ubiquitin-protein ligase ZNRF1.
      
 0.569
TACC1
Transforming acidic coiled-coil-containing protein 1.
   
  0.568
MACO1
Macoilin.
      
 0.565
BTC
Probetacellulin.
     
  0.537
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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