STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLEC16AProtein CLEC16A. (1040 aa)    
Predicted Functional Partners:
WDR44
WD repeat-containing protein 44.
      
 0.662
AQR
Intron-binding protein aquarius.
      
 0.661
RNF41
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NRDP1.
    
 
 0.585
DEXI
Dexamethasone-induced protein.
      
 0.555
PPAT
Amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.520
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
      
 0.517
ATOX1
Copper transport protein ATOX1.
      
 0.467
VPS39
Vam6/Vps39-like protein.
   
  
 0.421
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.