ENSLSDP00000001561 protein (Lonchura striata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLSDP00000001561

annotation not available (273 aa)

Predicted Functional Partners:

LOC110481576

0.644

LOC110469847

0.539

CYP26B1

0.535

LOC110469854

0.534

LOC110474232

0.531

LOC110482554

0.517

LOC110473893

0.515

CYP24A1

0.481

LOC110475813

0.477

AASDH

0.459

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AASDH	CYP24A1	ENSLSDP00000011187	ENSLSDP00000003551	Acyl-CoA synthetase family member 4.	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	0.502
AASDH	CYP26B1	ENSLSDP00000011187	ENSLSDP00000017379	Acyl-CoA synthetase family member 4.	Cytochrome P450 26B1; Belongs to the cytochrome P450 family.	0.547
AASDH	ENSLSDP00000001561	ENSLSDP00000011187	ENSLSDP00000001561	Acyl-CoA synthetase family member 4.	annotation not available	0.459
AASDH	LOC110469847	ENSLSDP00000011187	ENSLSDP00000017829	Acyl-CoA synthetase family member 4.	Cytochrome P450 4B1; Belongs to the cytochrome P450 family.	0.547
AASDH	LOC110469854	ENSLSDP00000011187	ENSLSDP00000017832	Acyl-CoA synthetase family member 4.	Cytochrome P450 4B1.	0.547
AASDH	LOC110473893	ENSLSDP00000011187	ENSLSDP00000004846	Acyl-CoA synthetase family member 4.	25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	0.502
AASDH	LOC110474232	ENSLSDP00000011187	ENSLSDP00000022927	Acyl-CoA synthetase family member 4.	Aromatase; Belongs to the cytochrome P450 family.	0.547
AASDH	LOC110475813	ENSLSDP00000011187	ENSLSDP00000025215	Acyl-CoA synthetase family member 4.	Cytochrome P450 26A1; Belongs to the cytochrome P450 family.	0.547
AASDH	LOC110481576	ENSLSDP00000011187	ENSLSDP00000009258	Acyl-CoA synthetase family member 4.	Cytochrome P450 3A40; Belongs to the cytochrome P450 family.	0.514
AASDH	LOC110482554	ENSLSDP00000011187	ENSLSDP00000007590	Acyl-CoA synthetase family member 4.	Cytochrome P450 4F22; Belongs to the cytochrome P450 family.	0.547
CYP24A1	AASDH	ENSLSDP00000003551	ENSLSDP00000011187	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	Acyl-CoA synthetase family member 4.	0.502
CYP24A1	ENSLSDP00000001561	ENSLSDP00000003551	ENSLSDP00000001561	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	annotation not available	0.481
CYP24A1	LOC110473893	ENSLSDP00000003551	ENSLSDP00000004846	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	0.914
CYP24A1	LOC110474232	ENSLSDP00000003551	ENSLSDP00000022927	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	Aromatase; Belongs to the cytochrome P450 family.	0.551
CYP24A1	LOC110475813	ENSLSDP00000003551	ENSLSDP00000025215	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	Cytochrome P450 26A1; Belongs to the cytochrome P450 family.	0.512
CYP26B1	AASDH	ENSLSDP00000017379	ENSLSDP00000011187	Cytochrome P450 26B1; Belongs to the cytochrome P450 family.	Acyl-CoA synthetase family member 4.	0.547
CYP26B1	ENSLSDP00000001561	ENSLSDP00000017379	ENSLSDP00000001561	Cytochrome P450 26B1; Belongs to the cytochrome P450 family.	annotation not available	0.535
CYP26B1	LOC110473893	ENSLSDP00000017379	ENSLSDP00000004846	Cytochrome P450 26B1; Belongs to the cytochrome P450 family.	25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial; Belongs to the cytochrome P450 family.	0.557
CYP26B1	LOC110475813	ENSLSDP00000017379	ENSLSDP00000025215	Cytochrome P450 26B1; Belongs to the cytochrome P450 family.	Cytochrome P450 26A1; Belongs to the cytochrome P450 family.	0.905
CYP26B1	LOC110481576	ENSLSDP00000017379	ENSLSDP00000009258	Cytochrome P450 26B1; Belongs to the cytochrome P450 family.	Cytochrome P450 3A40; Belongs to the cytochrome P450 family.	0.931