STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110468558VIP36-like protein. (164 aa)    
Predicted Functional Partners:
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 0.688
TMED2
Transmembrane emp24 domain-containing protein 2.
   
 0.665
LMAN1
Protein ERGIC-53.
   
 0.565
SEC22C
Vesicle-trafficking protein SEC22c; Belongs to the synaptobrevin family.
    
 0.564
SEC22A
Vesicle-trafficking protein SEC22a; Belongs to the synaptobrevin family.
    
 0.564
SEC24C
Protein transport protein Sec24C.
   
 
 0.560
BET1
BET1.
   
 
 0.556
GOLGA2
Golgin subfamily A member 2.
     
 0.554
SEC24D
Protein transport protein Sec24D.
   
 
  0.550
SEC24A
Protein transport protein Sec24A.
    
 0.548
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.