STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS2CLALS2 C-terminal-like protein. (325 aa)    
Predicted Functional Partners:
MICALL2
MICAL-like protein 2.
     
 0.695
UNC79
Protein unc-79.
    
 0.634
ENSLSDP00000021568
annotation not available
     
 0.582
RIN3
Ras and Rab interactor 3.
     
 0.582
RABGEF1
Rab5 GDP/GTP exchange factor.
    
 0.580
FAM163B
Protein FAM163B.
      
 0.567
ALS2
Alsin.
    
 0.560
SLC16A5
Monocarboxylate transporter 6.
    
 
 0.554
GAPVD1
GTPase-activating protein and VPS9 domain-containing protein 1.
    
 0.546
KIAA1109
Uncharacterized protein KIAA1109.
    
 
 0.545
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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