Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCNFCyclin-F; Belongs to the cyclin family. (672 aa)    
Predicted Functional Partners:
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.978
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.972
CCP110
UPF0505 protein C16orf62.
    
 
 0.964
CDC6
Cell division control protein 6.
   
 0.953
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 0.950
TARDBP
TAR DNA-binding protein 43.
    
 
 0.923
CDK1
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
   
 0.916
NUSAP1
Nucleolar and spindle associated protein 1.
   
 
 0.900
SQSTM1
Sequestosome-1.
    
 
 0.886
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 
 0.880
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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