Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DEXIDexamethasone-induced protein. (93 aa)    
Predicted Functional Partners:
CLEC16A
Protein CLEC16A.
      
 0.694
TRAPPC13
Trafficking protein particle complex subunit 13.
      
 0.673
MRPS28
28S ribosomal protein S28, mitochondrial.
      
 0.670
TRMT9B
Putative tRNA methyltransferase 9-like protein.
      
 0.663
MRPL45
39S ribosomal protein L45, mitochondrial.
      
 0.592
CUNH3orf18
Uncharacterized protein C3orf18.
      
 0.590
MCFD2
Multiple coagulation factor deficiency protein 2.
      
 0.586
CIITA
MHC class II transactivator.
      
 0.585
SUPT20H
Transcription factor SPT20.
      
 0.583
SUSD6
Sushi domain-containing protein 6.
      
 0.571
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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