Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IFRD1Interferon-related developmental regulator 1. (544 aa)    
Predicted Functional Partners:
COMMD10
COMM domain-containing protein 10.
   
 0.754
COMMD2
COMM domain-containing protein 2.
    
 0.720
COMMD6
COMM domain-containing protein 6.
    
 0.708
COMMD1
COMM domain-containing protein 1.
   
 0.691
COMMD7
COMM domain-containing protein 7.
   
 0.686
LOC110470611
COMM domain-containing protein 3.
    
 0.684
COMMD9
COMM domain-containing protein 9.
   
 0.628
UBXN7
UBX domain-containing protein 7.
     
  0.614
ANKMY2
Ankyrin repeat and MYND domain-containing protein 2.
     
 0.607
CCDC93
Coiled-coil domain-containing protein 93.
    
 
 0.573
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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