GLE1 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLE1

Nucleoporin GLE1. (605 aa)

Predicted Functional Partners:

RAE1

0.976

NUPL2

0.969

NUP155

0.967

NUP107

0.963

NUP133

0.962

NUP54

0.961

NUP205

0.960

NUP214

0.953

NUP93

0.952

NUP98

0.952

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE1	NUP107	ENSLSDP00000001633	ENSLSDP00000004548	Nucleoporin GLE1.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.963
GLE1	NUP133	ENSLSDP00000001633	ENSLSDP00000023248	Nucleoporin GLE1.	Nuclear pore complex protein Nup133.	0.962
GLE1	NUP155	ENSLSDP00000001633	ENSLSDP00000014299	Nucleoporin GLE1.	Nuclear pore complex protein Nup155.	0.967
GLE1	NUP205	ENSLSDP00000001633	ENSLSDP00000002332	Nucleoporin GLE1.	Nuclear pore complex protein Nup205.	0.960
GLE1	NUP214	ENSLSDP00000001633	ENSLSDP00000003106	Nucleoporin GLE1.	Nuclear pore complex protein Nup214.	0.953
GLE1	NUP54	ENSLSDP00000001633	ENSLSDP00000000574	Nucleoporin GLE1.	Nuclear pore complex protein Nup54.	0.961
GLE1	NUP93	ENSLSDP00000001633	ENSLSDP00000001084	Nucleoporin GLE1.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.952
GLE1	NUP98	ENSLSDP00000001633	ENSLSDP00000012296	Nucleoporin GLE1.	Nuclear pore complex protein Nup98-Nup96.	0.952
GLE1	NUPL2	ENSLSDP00000001633	ENSLSDP00000002568	Nucleoporin GLE1.	Nucleoporin-like protein 2.	0.969
GLE1	RAE1	ENSLSDP00000001633	ENSLSDP00000006440	Nucleoporin GLE1.	mRNA export factor.	0.976
NUP107	GLE1	ENSLSDP00000004548	ENSLSDP00000001633	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin GLE1.	0.963
NUP107	NUP133	ENSLSDP00000004548	ENSLSDP00000023248	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133.	0.999
NUP107	NUP155	ENSLSDP00000004548	ENSLSDP00000014299	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup155.	0.989
NUP107	NUP205	ENSLSDP00000004548	ENSLSDP00000002332	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup205.	0.994
NUP107	NUP214	ENSLSDP00000004548	ENSLSDP00000003106	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup214.	0.982
NUP107	NUP54	ENSLSDP00000004548	ENSLSDP00000000574	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup54.	0.978
NUP107	NUP93	ENSLSDP00000004548	ENSLSDP00000001084	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.994
NUP107	NUP98	ENSLSDP00000004548	ENSLSDP00000012296	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup98-Nup96.	0.999
NUP107	NUPL2	ENSLSDP00000004548	ENSLSDP00000002568	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin-like protein 2.	0.839
NUP107	RAE1	ENSLSDP00000004548	ENSLSDP00000006440	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	mRNA export factor.	0.945