Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSLSDP00000001645LOW QUALITY PROTEIN: 39S ribosomal protein L16, mitochondrial-like. (266 aa)    
Predicted Functional Partners:
MRPL2
39S ribosomal protein L2, mitochondrial.
  
 0.977
MRPL13
39S ribosomal protein L13, mitochondrial.
  
 0.956
MRPL10
39S ribosomal protein L10, mitochondrial.
   
 0.950
MRPL11
39S ribosomal protein L11, mitochondrial.
  
 0.949
MRPL12
39S ribosomal protein L12, mitochondrial.
  
 0.947
MRPL20
39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family.
   
 0.945
MRPL21
39S ribosomal protein L21, mitochondrial.
   
 0.939
MRPL46
39S ribosomal protein L46, mitochondrial.
   
 0.938
MRPL28
39S ribosomal protein L28, mitochondrial.
   
 0.937
MRPL41
39S ribosomal protein L41, mitochondrial.
   
 0.936
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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