KCTD20 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KCTD20

BTB/POZ domain-containing protein KCTD20. (433 aa)

Predicted Functional Partners:

CUL3

0.687

SMPDL3A

0.568

SQOR

0.568

RLOC_00012686

0.541

KCTD6

0.524

KCTD7

0.501

KCTD9

0.498

KLHL31

0.477

KCTD3

0.448

TNFAIP1

0.446

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	KCTD20	ENSLSDP00000006776	ENSLSDP00000001654	Cullin-3; Belongs to the cullin family.	BTB/POZ domain-containing protein KCTD20.	0.687
CUL3	KCTD3	ENSLSDP00000006776	ENSLSDP00000000575	Cullin-3; Belongs to the cullin family.	BTB/POZ domain-containing protein KCTD3.	0.766
CUL3	KCTD6	ENSLSDP00000006776	ENSLSDP00000010487	Cullin-3; Belongs to the cullin family.	BTB/POZ domain-containing protein KCTD6.	0.974
CUL3	KCTD7	ENSLSDP00000006776	ENSLSDP00000017647	Cullin-3; Belongs to the cullin family.	BTB/POZ domain-containing protein KCTD7.	0.973
CUL3	KCTD9	ENSLSDP00000006776	ENSLSDP00000002920	Cullin-3; Belongs to the cullin family.	BTB/POZ domain-containing protein KCTD9.	0.938
CUL3	KLHL31	ENSLSDP00000006776	ENSLSDP00000000064	Cullin-3; Belongs to the cullin family.	Kelch-like protein 31.	0.677
CUL3	TNFAIP1	ENSLSDP00000006776	ENSLSDP00000019390	Cullin-3; Belongs to the cullin family.	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2.	0.946
KCTD20	CUL3	ENSLSDP00000001654	ENSLSDP00000006776	BTB/POZ domain-containing protein KCTD20.	Cullin-3; Belongs to the cullin family.	0.687
KCTD20	KCTD3	ENSLSDP00000001654	ENSLSDP00000000575	BTB/POZ domain-containing protein KCTD20.	BTB/POZ domain-containing protein KCTD3.	0.448
KCTD20	KCTD6	ENSLSDP00000001654	ENSLSDP00000010487	BTB/POZ domain-containing protein KCTD20.	BTB/POZ domain-containing protein KCTD6.	0.524
KCTD20	KCTD7	ENSLSDP00000001654	ENSLSDP00000017647	BTB/POZ domain-containing protein KCTD20.	BTB/POZ domain-containing protein KCTD7.	0.501
KCTD20	KCTD9	ENSLSDP00000001654	ENSLSDP00000002920	BTB/POZ domain-containing protein KCTD20.	BTB/POZ domain-containing protein KCTD9.	0.498
KCTD20	KLHL31	ENSLSDP00000001654	ENSLSDP00000000064	BTB/POZ domain-containing protein KCTD20.	Kelch-like protein 31.	0.477
KCTD20	RLOC_00012686	ENSLSDP00000001654	ENSLSDP00000003655	BTB/POZ domain-containing protein KCTD20.	C2 calcium-dependent domain-containing protein 4C.	0.541
KCTD20	SMPDL3A	ENSLSDP00000001654	ENSLSDP00000022640	BTB/POZ domain-containing protein KCTD20.	Acid sphingomyelinase-like phosphodiesterase.	0.568
KCTD20	SQOR	ENSLSDP00000001654	ENSLSDP00000024406	BTB/POZ domain-containing protein KCTD20.	Sulfide:quinone oxidoreductase, mitochondrial.	0.568
KCTD20	TNFAIP1	ENSLSDP00000001654	ENSLSDP00000019390	BTB/POZ domain-containing protein KCTD20.	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2.	0.446
KCTD3	CUL3	ENSLSDP00000000575	ENSLSDP00000006776	BTB/POZ domain-containing protein KCTD3.	Cullin-3; Belongs to the cullin family.	0.766
KCTD3	KCTD20	ENSLSDP00000000575	ENSLSDP00000001654	BTB/POZ domain-containing protein KCTD3.	BTB/POZ domain-containing protein KCTD20.	0.448
KCTD3	KCTD7	ENSLSDP00000000575	ENSLSDP00000017647	BTB/POZ domain-containing protein KCTD3.	BTB/POZ domain-containing protein KCTD7.	0.718