STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2CD3C2 domain-containing protein 3. (1965 aa)    
Predicted Functional Partners:
PTPRZ1
Receptor-type tyrosine-protein phosphatase zeta isoform X1.
      
 0.874
APOB
Apolipoprotein B-100.
      
 0.791
CEP41
Centrosomal protein.
     
 0.742
CEP290
Centrosomal protein.
    
 0.735
ARL6IP4
ADP-ribosylation factor-like protein 6-interacting protein 4.
    
   0.718
SCLT1
Sodium channel and clathrin linker 1.
    
 0.707
OFD1
Oral-facial-digital syndrome 1 protein.
    
 0.705
CEP83
Centrosomal protein.
     
 0.690
FOPNL
LisH domain-containing protein FOPNL.
      
 0.670
ARL13B
ADP-ribosylation factor-like protein 13B.
      
 0.662
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.