STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPR179Putative G-protein coupled receptor 158. (2308 aa)    
Predicted Functional Partners:
WDR90
WD repeat-containing protein 90.
    
   0.613
TRAK1
Trafficking kinesin-binding protein 1.
      
 0.527
GNB5
Guanine nucleotide-binding protein subunit beta-5.
    
 0.471
NYX
Nyctalopin.
     
 0.458
ZNF638
Zinc finger protein 638.
  
 
   0.420
NME8
Thioredoxin domain-containing protein 3; Belongs to the NDK family.
    
 
 0.412
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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