Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB40CRas-related protein Rab-40C. (285 aa)    
Predicted Functional Partners:
CUL5
Cullin-5; Belongs to the cullin family.
    
 
 0.891
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
   
 
 0.867
ELOB
Transcription elongation factor B polypeptide 2.
    
 
 0.830
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
 0.806
RILPL2
RILP-like protein 2.
    
 
 0.700
PSME3IP1
Protein FAM192A.
    
   0.674
ISCA1
Iron-sulfur cluster assembly 1, mitochondrial.
    
   0.661
MTHFSD
Methenyltetrahydrofolate synthase domain-containing protein.
   
    0.653
WDR6
WD repeat-containing protein 6.
   
    0.631
ASF1A
Histone chaperone ASF1.
   
    0.628
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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