STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB40CRas-related protein Rab-40C. (285 aa)    
Predicted Functional Partners:
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 
 0.711
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
    
 0.686
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.682
CUL5
Cullin-5; Belongs to the cullin family.
    
 
 0.673
RILPL2
RILP-like protein 2.
    
 
 0.671
MTHFSD
Methenyltetrahydrofolate synthase domain-containing protein.
   
    0.655
WDR6
WD repeat-containing protein 6.
   
    0.644
ASF1A
Histone chaperone ASF1.
   
    0.640
UTP15
U3 small nucleolar RNA-associated protein 15.
   
    0.638
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.600
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.