STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIITAMHC class II transactivator. (1089 aa)    
Predicted Functional Partners:
RFXANK
DNA-binding protein RFXANK.
   
 
 0.713
RFXAP
Regulatory factor X-associated protein.
      
 0.654
CD74
H-2 class II histocompatibility antigen gamma chain.
   
  
 0.564
LHPP
Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.
      
 0.515
BIRC7
Baculoviral IAP repeat containing 7.
    
 0.504
PAN2
PAB-dependent poly(A)-specific ribonuclease subunit PAN2.
   
  
 0.467
DEXI
Dexamethasone-induced protein.
      
 0.461
MAVS
Mitochondrial antiviral-signaling protein.
    
 0.438
LOC110471723
Ribonuclease CL2; Belongs to the pancreatic ribonuclease family.
   
   0.434
CD4
T-cell surface glycoprotein CD4.
   
  
 0.424
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.