Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CIITAMHC class II transactivator. (1089 aa)    
Predicted Functional Partners:
RFXANK
DNA-binding protein RFXANK.
   
 0.900
PSMC5
26S protease regulatory subunit 8; Belongs to the AAA ATPase family.
   
   0.843
AK9
Adenylate kinase 9.
   
 
 0.772
RFXAP
Regulatory factor X-associated protein.
      
 0.723
NWD2
NACHT and WD repeat domain-containing protein 2.
   
 
 0.676
CD74
H-2 class II histocompatibility antigen gamma chain.
   
  
 0.665
XPO1
Exportin-1.
   
 
 0.642
FBXO11
F-box only protein 11.
    
 
 0.587
CD4
T-cell surface glycoprotein CD4.
   
 
 0.586
DEXI
Dexamethasone-induced protein.
      
 0.585
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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