Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRR35Proline rich 35. (573 aa)    
Predicted Functional Partners:
RRP36
Ribosomal RNA processing protein 36.
      
 0.726
KBTBD12
Kelch repeat and BTB domain-containing protein 12.
      
 0.707
SIPA1L2
Signal-induced proliferation-associated 1-like protein 2.
      
 0.704
KCNG3
Potassium voltage-gated channel subfamily G member 3; Belongs to the potassium channel family.
   
  
 0.691
TRAPPC6B
Trafficking protein particle complex subunit 6B.
      
 0.685
RAB11FIP3
Rab11 family-interacting protein 3.
      
 0.683
KLHDC8B
Kelch domain-containing protein 8B.
      
 0.680
METRN
Meteorin.
      
 0.601
TMEM43
Transmembrane protein 43.
      
 0.599
IFT140
Intraflagellar transport protein 140.
      
 0.588
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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