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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVP23AGolgi apparatus membrane protein TVP23 homolog. (240 aa)    
Predicted Functional Partners:
ULK2
Serine/threonine-protein kinase ULK2.
    
   0.650
ULK1
Serine/threonine-protein kinase ULK1.
    
   0.650
YIPF1
Protein YIPF.
   
 
 0.639
YIPF3
Protein YIPF3.
   
 
 0.605
STK35
Serine/threonine-protein kinase 35; Belongs to the protein kinase superfamily.
    
   0.523
ULK3
Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily.
    
   0.523
PDIK1L
Serine/threonine-protein kinase PDIK1L; Belongs to the protein kinase superfamily.
    
   0.523
COP1
E3 ubiquitin-protein ligase RFWD2.
      
 0.516
NEXMIF
Protein KIAA2022.
      
 0.515
CACNA1I
Voltage-dependent T-type calcium channel subunit alpha-1I.
      
 0.501
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.