Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LAMA4Laminin subunit alpha-4. (1826 aa)    
Predicted Functional Partners:
MCAM
Cell surface glycoprotein MUC18.
   
 0.930
CD44
CD44 antigen.
    
 0.915
ITGB4
Integrin beta.
   
 0.874
ITGA3
Integrin alpha-3; Belongs to the integrin alpha chain family.
   
 0.867
ITGA7
Integrin alpha-7.
    
 0.851
ITGA6
Integrin alpha-6; Belongs to the integrin alpha chain family.
    
 0.851
MEGF11
Multiple epidermal growth factor-like domains protein 11.
     
  0.846
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.838
LAMB2
Laminin subunit beta-2.
   
 0.838
DAG1
Dystroglycan.
    
 0.817
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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