STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF128E3 ubiquitin-protein ligase RNF128. (415 aa)    
Predicted Functional Partners:
ENSLSDP00000001726
annotation not available
   
 
0.981
OTUB1
Ubiquitin thioesterase.
    
 0.774
USP8
Ubiquitin carboxyl-terminal hydrolase 8; Belongs to the peptidase C19 family.
    
 0.696
S100Z
Protein S100; Belongs to the S-100 family.
      
 0.642
RNF150
RING finger protein 150.
   
0.566
ADCYAP1
Glucagon family neuropeptide.
      
 0.542
KCNV2
Potassium voltage-gated channel subfamily V member 2; Belongs to the potassium channel family.
    
 
 0.536
RNF13
E3 ubiquitin-protein ligase RNF13.
      
0.524
NDUFAF6
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
      
 0.520
PNPLA8
Calcium-independent phospholipase A2-gamma.
      
 0.516
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.