STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF128E3 ubiquitin-protein ligase RNF128. (415 aa)    
Predicted Functional Partners:
ENSLSDP00000001726
annotation not available
   
  
 0.973
OTUB1
Ubiquitin thioesterase.
    
 0.955
S100Z
Protein S100; Belongs to the S-100 family.
      
 0.874
USP8
Ubiquitin carboxyl-terminal hydrolase 8; Belongs to the peptidase C19 family.
    
 0.752
KCNV2
Potassium voltage-gated channel subfamily V member 2; Belongs to the potassium channel family.
    
 
 0.695
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.686
ADCYAP1
Glucagon family neuropeptide.
      
 0.682
NDUFAF6
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
      
 0.677
PNPLA8
Calcium-independent phospholipase A2-gamma.
      
 0.676
SLC39A8
Zinc transporter ZIP8.
      
 0.589
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (18%) [HD]