Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPCS2Signal peptidase complex subunit 2. (248 aa)    
Predicted Functional Partners:
SPCS1
Signal peptidase complex subunit 1.
   
 0.999
SPCS3
Signal peptidase complex subunit 3.
   
 0.998
SEC11A
Signal peptidase complex catalytic subunit SEC11.
   
 0.966
SEC11C
Signal peptidase complex catalytic subunit SEC11.
   
 0.966
GRP
Gastrin-releasing peptide.
   
 0.931
SEC63
Translocation protein SEC63.
   
 
 0.913
SEC62
Translocation protein SEC62.
   
 
 0.893
ERI3
ERI1 exoribonuclease 3 isoform X1.
      
 0.873
HSPA5
Glucose-regulated protein; Belongs to the heat shock protein 70 family.
   
 
 0.871
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
      
 0.870
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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