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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAPGEF3Rap guanine nucleotide exchange factor 3. (739 aa)    
Predicted Functional Partners:
RAP1B
Ras-related protein Rap-1b.
    
 0.713
RAP1A
Ras-related protein Rap-1A.
    
 0.713
ABCC8
ATP-binding cassette sub-family C member 8.
    
 0.671
KCNJ11
ATP-sensitive inward rectifier potassium channel 11.
     
 0.652
AKAP6
A-kinase anchor protein 6.
    
 
 0.632
ABCC9
ATP-binding cassette sub-family C member 9.
    
 0.608
AKAP1
A-kinase anchor protein 1, mitochondrial.
      
 0.591
RAPGEF4
Rap guanine nucleotide exchange factor 4.
  
  
 
0.588
ALDH7A1
Alpha-aminoadipic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.580
RAP2A
Ras-related protein Rap-2a.
    
 0.568
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.