STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAPGEF3Rap guanine nucleotide exchange factor 3. (739 aa)    
Predicted Functional Partners:
ABCC8
ATP-binding cassette sub-family C member 8.
    
 0.926
KCNJ11
ATP-sensitive inward rectifier potassium channel 11.
     
 0.917
RAP1B
Ras-related protein Rap-1b.
    
 0.859
RAP1A
Ras-related protein Rap-1A.
    
 0.859
RAPGEF4
Rap guanine nucleotide exchange factor 4.
   
 
  0.819
AKAP6
A-kinase anchor protein 6.
    
 
 0.721
AKAP1
A-kinase anchor protein 1, mitochondrial.
      
 0.685
ABCC9
ATP-binding cassette sub-family C member 9.
    
 0.646
RAF1
RAF proto-oncogene serine/threonine-protein kinase.
     
 0.622
RIMS2
Regulating synaptic membrane exocytosis protein 2.
   
 
 0.619
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.