STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN15Calpain-15; Belongs to the peptidase C2 family. (1074 aa)    
Predicted Functional Partners:
MAMLD1
Mastermind-like domain-containing protein 1.
    
 
 0.677
CAST
Calpastatin.
    
 0.662
TFB2M
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
      
 0.660
CAPNS1
Calpain small subunit 1.
   
 0.652
CAPNS2
Calpain small subunit 2.
   
 0.652
ITSN2
Intersectin-2.
   
 
  0.598
ZNF236
Zinc finger protein 236.
   
 0.575
ETV7
ETS variant transcription factor 7.
      
 0.567
P2RY1
P2Y purinoceptor 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.559
EFCAB7
EF-hand calcium-binding domain-containing protein 7.
   
 
 0.554
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.