STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D8BTBC1 domain family member 8B. (1125 aa)    
Predicted Functional Partners:
GAK
Cyclin-G-associated kinase.
   
 
  0.941
DNAJC6
Putative tyrosine-protein phosphatase auxilin.
   
 
  0.623
YIPF6
Protein YIPF.
   
 
  0.521
IGF2R
Cation-independent mannose-6-phosphate receptor.
   
 
  0.514
GRPEL2
GrpE 2, mitochondrial; Belongs to the GrpE family.
      
 0.504
LOC110469558
RCC1 and BTB domain-containing protein 2.
   
  
 0.491
AFAP1L1
Actin filament-associated protein 1-like 1.
      
 0.483
AP4B1
AP complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
 
  0.436
AP2B1
AP complex subunit beta.
   
 
  0.432
AP1B1
AP complex subunit beta.
   
 
  0.432
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.