Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TBC1D8BTBC1 domain family member 8B. (1125 aa)    
Predicted Functional Partners:
GRPEL2
GrpE 2, mitochondrial; Belongs to the GrpE family.
      
 0.651
GAK
Cyclin-G-associated kinase.
   
 
  0.607
CDC16
Cell division cycle protein 16.
      
 0.585
GAPVD1
GTPase-activating protein and VPS9 domain-containing protein 1.
   
 
 0.576
ANKFY1
Rabankyrin-5.
     
 0.569
LOC110469558
RCC1 and BTB domain-containing protein 2.
   
  
 0.567
AFAP1L1
Actin filament-associated protein 1-like 1.
      
 0.567
HS3ST4
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.566
YIPF6
Protein YIPF.
   
 
  0.546
HIP1R
Huntingtin-interacting protein 1-related protein.
   
 
  0.545
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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