Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MTCH1Mitochondrial carrier 1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (343 aa)    
Predicted Functional Partners:
TIMMDC1
Complex I assembly factor TIMMDC1, mitochondrial.
   
   0.618
NDUFS1
NADH-ubiquinone oxidoreductase subunit, mitochondrial; Belongs to the complex I 75 kDa subunit family.
   
 
 0.534
MYSM1
Histone H2A deubiquitinase MYSM1.
   
  
 0.515
NDUFB9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9; Belongs to the complex I LYR family.
   
 
 0.499
SLC25A46
Solute carrier family 25 member 46; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.497
ALKBH3
Alpha-ketoglutarate-dependent dioxygenase alkB 3.
   
  
 0.489
NDUFS3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; Belongs to the complex I 30 kDa subunit family.
   
 
 0.464
NDUFB8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial.
   
   0.453
SLC25A11
Mitochondrial 2-oxoglutarate/malate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.431
TMEM18
Transmembrane protein 18.
      
 0.427
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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