STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF144ARBR-type E3 ubiquitin transferase. (292 aa)    
Predicted Functional Partners:
PRKDC
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.986
TRAPPC12
Trafficking protein particle complex subunit 12.
      
 0.679
UBA52
Ubiquitin-60S ribosomal protein L40.
    
  0.662
EIPR1
Protein TSSC1.
      
 0.629
RNF216
E3 ubiquitin-protein ligase RNF216.
    
 0.626
LOC110471805
Ubiquitin.
    
  0.615
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
  0.605
FUS1
Ubiquitin-60S ribosomal protein L40.
    
  0.605
VXN
Vexin.
      
 0.603
RNF223
RING finger protein 223.
    
 0.596
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.