STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENDOUPoly(U)-specific endoribonuclease. (345 aa)    
Predicted Functional Partners:
RNGTT
mRNA-capping enzyme.
      
 0.574
PAMR1
Inactive serine protease PAMR1; Belongs to the peptidase S1 family.
      
 0.569
IGHMBP2
DNA-binding protein SMUBP-2.
      
 0.481
TMEM45B_2
Transmembrane protein 45B.
      
 0.458
CTPS2
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
      
 0.453
CTPS1
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
      
 0.453
IMPA2
Inositol-1-monophosphatase.
      
 0.434
DDX31
RNA helicase.
      
 0.427
DDX55
RNA helicase.
      
 0.423
DDX10
RNA helicase.
      
 0.423
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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