STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN5Calpain-5; Belongs to the peptidase C2 family. (670 aa)    
Predicted Functional Partners:
CAPNS2
Calpain small subunit 2.
 
 
 0.695
DLG2
Disks large 2.
    
 
 0.691
USP30
Ubiquitin carboxyl-terminal hydrolase.
      
 0.672
ITSN2
Intersectin-2.
   
 
  0.598
CAST
Calpastatin.
    
 0.577
CAPNS1
Calpain small subunit 1.
   
 0.561
ENSLSDP00000008130
annotation not available
 
 
  0.429
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.