STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGB3High mobility group protein B3. (202 aa)    
Predicted Functional Partners:
TLR4
Toll-like receptor 4; Belongs to the Toll-like receptor family.
    
 0.818
SEC23IP
SEC23-interacting protein.
   
   0.718
LY96
Lymphocyte antigen 96.
    
 0.694
HMGB1
High mobility group protein B1.
   
   0.691
HMGB2
High mobility group protein B2.
   
   0.673
H1-0
Histone H5.
   
 0.596
MAPT
Microtubule associated protein tau.
    
 
 0.592
WDFY1
WD repeat and FYVE domain-containing protein 1.
   
 0.591
APOH
Beta-2-glycoprotein 1.
    
 
 0.589
AMMECR1
AMME syndrome candidate gene 1.
   
  
 0.571
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.