HS6ST1 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HS6ST1

Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate. (408 aa)

Predicted Functional Partners:

SDC2

0.481

SDC1

0.437

GLCE

0.415

GPC6

0.414

GPC4

0.414

GPC1

0.414

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLCE	HS6ST1	ENSLSDP00000025934	ENSLSDP00000001807	Heparosan-N-sulfate-glucuronate 5-epimerase.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.415
GLCE	SDC1	ENSLSDP00000025934	ENSLSDP00000021007	Heparosan-N-sulfate-glucuronate 5-epimerase.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.439
GLCE	SDC2	ENSLSDP00000025934	ENSLSDP00000002987	Heparosan-N-sulfate-glucuronate 5-epimerase.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.573
GPC1	HS6ST1	ENSLSDP00000023135	ENSLSDP00000001807	Glypican-1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.414
GPC1	SDC1	ENSLSDP00000023135	ENSLSDP00000021007	Glypican-1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.452
GPC1	SDC2	ENSLSDP00000023135	ENSLSDP00000002987	Glypican-1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.616
GPC4	HS6ST1	ENSLSDP00000006973	ENSLSDP00000001807	Glypican-4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.414
GPC4	SDC1	ENSLSDP00000006973	ENSLSDP00000021007	Glypican-4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.452
GPC4	SDC2	ENSLSDP00000006973	ENSLSDP00000002987	Glypican-4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.616
GPC6	HS6ST1	ENSLSDP00000003703	ENSLSDP00000001807	Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.414
GPC6	SDC1	ENSLSDP00000003703	ENSLSDP00000021007	Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.452
GPC6	SDC2	ENSLSDP00000003703	ENSLSDP00000002987	Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.616
HS6ST1	GLCE	ENSLSDP00000001807	ENSLSDP00000025934	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Heparosan-N-sulfate-glucuronate 5-epimerase.	0.415
HS6ST1	GPC1	ENSLSDP00000001807	ENSLSDP00000023135	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Glypican-1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.414
HS6ST1	GPC4	ENSLSDP00000001807	ENSLSDP00000006973	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Glypican-4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.414
HS6ST1	GPC6	ENSLSDP00000001807	ENSLSDP00000003703	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Glypican-6; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.414
HS6ST1	SDC1	ENSLSDP00000001807	ENSLSDP00000021007	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.437
HS6ST1	SDC2	ENSLSDP00000001807	ENSLSDP00000002987	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.481
SDC1	GLCE	ENSLSDP00000021007	ENSLSDP00000025934	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	Heparosan-N-sulfate-glucuronate 5-epimerase.	0.439
SDC1	GPC1	ENSLSDP00000021007	ENSLSDP00000023135	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	Glypican-1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.452

page 1 of 2

Server load: low (10%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About