Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSEDermatan-sulfate epimerase. (957 aa)    
Predicted Functional Partners:
DSEL
Dermatan-sulfate epimerase-like protein.
     
 
0.900
B3GALT6
Hexosyltransferase.
      
 0.687
CSGALNACT1
Hexosyltransferase.
      
 0.685
REV1
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.
      
 0.682
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
      
 0.668
CHST11
Carbohydrate sulfotransferase.
      
 0.662
CSGALNACT2
Hexosyltransferase.
      
 0.575
CHST14
Carbohydrate sulfotransferase.
      
 0.567
CHST3
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.565
TPPP
Tubulin polymerization-promoting protein.
      
 0.548
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.