STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001817annotation not available (106 aa)    
Predicted Functional Partners:
TGFB2
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.699
COL6A2
Collagen type VI alpha 2 chain.
   
 0.613
FKBP10
Peptidylprolyl isomerase.
   
 0.590
TIMP2
Metalloproteinase inhibitor 2.
     
 0.589
PRRX1
Paired mesoderm homeobox protein 1.
    
 0.583
PRRX2
Paired mesoderm homeobox protein 2.
    
 0.582
TIMP3
Metalloproteinase inhibitor 3.
     
 0.570
COL6A1_1
Collagen alpha-1(VI) chain.
   
 0.565
VGLL3
Transcription cofactor vestigial-like protein 3.
      
 0.565
GPR68
Ovarian cancer G-protein coupled receptor 1; Belongs to the G-protein coupled receptor 1 family.
     
 0.539
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.